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GEO accession:
Sample GSM117072
Query DataSets for GSM117072
Status
Public on Sep 30, 2006
Title
NA18871_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA18871
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18871
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
6.604
0.173128
0.058288
SNP_A-1780618
BB
0.007813
12.306
0.054571
0.031822
SNP_A-1780632
AB
0.382813
4.758
0.940625
0.485859
SNP_A-1780654
AB
0.007813
11.831
0.516615
0.620808
SNP_A-4192495
BB
0.023438
8.404
0.202830
0.075795
SNP_A-4192498
AB
0.345703
0.522
0.154982
0.374733
SNP_A-1780732
BB
0.031250
10.240
0.000000
0.056230
SNP_A-1780848
AB
0.007813
8.844
0.574127
0.577877
SNP_A-1780985
BB
0.015625
9.990
0.000000
0.000000
SNP_A-1781022
AA
0.007813
6.783
1.000000
1.000000
SNP_A-1781076
AB
0.007813
9.568
0.606728
0.526863
SNP_A-1781249
AB
0.023438
4.201
0.612078
0.491941
SNP_A-1781276
AB
0.062500
5.357
0.433814
0.524862
SNP_A-1781302
BB
0.007813
10.307
0.132813
0.070170
SNP_A-1781510
AA
0.007813
25.407
0.944404
1.000000
SNP_A-4192564
BB
0.023438
10.298
0.071161
0.000000
SNP_A-1781614
AB
0.007813
8.853
0.669471
0.534510
SNP_A-1781633
AA
0.007813
20.475
1.000000
1.000000
SNP_A-1781764
AA
0.023438
3.560
0.940490
0.777887
SNP_A-1781829
BB
0.007813
8.283
0.109140
0.185985
Total number of rows:
262264
Table truncated, full table size
12916 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117072.CEL.gz
44.6 Mb
(ftp)
(http)
CEL
GSM117072.raw.txt.gz
27.3 Mb
(ftp)
(http)
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