GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM117059
Query DataSets for GSM117059
Status
Public on Sep 30, 2006
Title
NA18853_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA18853
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18853
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
6.824
0.141748
0.000000
SNP_A-1780618
BB
0.007813
16.176
0.061065
0.027382
SNP_A-1780632
AA
0.007813
5.906
0.916893
0.854777
SNP_A-1780654
AB
0.007813
11.408
0.509294
0.675364
SNP_A-4192495
BB
0.007813
15.360
0.044365
0.030870
SNP_A-4192498
BB
0.000977
12.106
0.000000
0.000000
SNP_A-1780732
BB
0.015625
12.032
0.000000
0.000000
SNP_A-1780848
BB
0.382813
-0.647
0.000000
0.289408
SNP_A-1780985
AB
0.007813
4.503
0.588109
0.476965
SNP_A-1781022
AA
0.007813
7.744
0.959044
1.000000
SNP_A-1781076
AB
0.007813
7.105
0.552910
0.586760
SNP_A-1781249
AB
0.007813
6.913
0.588256
0.485219
SNP_A-1781276
AB
0.039063
8.229
0.487737
0.357834
SNP_A-1781302
BB
0.023438
10.441
0.098039
0.062069
SNP_A-1781510
AA
0.007813
25.554
0.957627
1.000000
SNP_A-4192564
BB
0.007813
9.208
0.059502
0.023191
SNP_A-1781614
AB
0.007813
11.784
0.588648
0.517877
SNP_A-1781633
AA
0.007813
16.178
0.965352
1.000000
SNP_A-1781764
AB
0.023438
16.122
0.508648
0.401499
SNP_A-1781829
AA
0.007813
6.922
0.924635
0.805520
Total number of rows:
262264
Table truncated, full table size
12934 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117059.CEL.gz
44.4 Mb
(ftp)
(http)
CEL
GSM117059.raw.txt.gz
27.0 Mb
(ftp)
(http)
TXT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
