GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM116947
Query DataSets for GSM116947
Status
Public on Sep 30, 2006
Title
NA12236_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: A3
Biomaterial provider
Coriell NA12236
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12236
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
11.951
0.171963
0.000000
SNP_A-1780618
BB
0.007813
18.530
0.000000
0.033379
SNP_A-1780632
AB
0.250000
6.156
0.861809
0.616667
SNP_A-1780654
AA
0.007813
27.297
0.991263
0.971901
SNP_A-4192495
BB
0.007813
14.747
0.000000
0.020235
SNP_A-4192498
BB
0.000488
15.663
0.000000
0.000000
SNP_A-1780732
BB
0.015625
17.653
0.000000
0.039063
SNP_A-1780848
AA
0.007813
25.472
0.853935
0.982545
SNP_A-1780985
AB
0.015625
5.561
0.460548
0.439353
SNP_A-1781022
AA
0.007813
8.696
0.958691
1.000000
SNP_A-1781076
AA
0.007813
18.451
0.965390
1.000000
SNP_A-1781249
AA
0.007813
13.340
0.939443
0.917533
SNP_A-1781276
AA
0.039063
9.882
0.856979
0.969796
SNP_A-1781302
BB
0.023438
14.966
0.097895
0.018676
SNP_A-1781510
AA
0.007813
18.388
0.951121
1.000000
SNP_A-4192564
BB
0.007813
8.791
0.000000
0.147196
SNP_A-1781614
AB
0.007813
12.213
0.648368
0.595439
SNP_A-1781633
AA
0.007813
28.145
1.000000
1.000000
SNP_A-1781764
AB
0.007813
16.182
0.470774
0.441479
SNP_A-1781829
AA
0.023438
8.602
0.925944
0.816931
Total number of rows:
262264
Table truncated, full table size
12975 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM116947.CEL.gz
43.4 Mb
(ftp)
(http)
CEL
GSM116947.raw.txt.gz
26.3 Mb
(ftp)
(http)
TXT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
