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Sample GSM11679 Query DataSets for GSM11679
Status Public on May 10, 2004
Title GC2_DT104_3hr H2O2_2d663_3
Sample type genomic
 
Channel 1
Source name DT104 2hr H2O2 gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name DT104 log phase gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description DT104 exposed to 2mM H2O2 for 3hr compared to DT104 untreated log phase gDNA. Treated sample labeled with Cy3.
User - Fblackmer
Date_of_Scan = Tue Feb 04 13:56:30 2003
Keywords = Salmonella
 
Submission date Oct 17, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE813 DT104_hydrogen_peroxide_2mM_DNA

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2190 41020 25088.4375 81.794121 25537.95508 191.814163 186.097076 24900 12.22466 0.953973 0.500168 0.995094 130.795542 0.57162 31050.48047 165.397064 31110.92578 297.639069 190.992981 26600 12.22466 0.969974 0.500206 0.991966 104.322597 0.571664 1 1 1 0 1 1 1 1 1 0 1 1 1 25006.64338 30885.08341 0.05655536 0.034807433 1.624806984 0.210801777
2 2440 41020 4682.836426 64.5 4272.055176 123.69709 187.290573 20200 12.22466 0.958875 0.90654 0.996803 37.857288 0.84129 11327.09082 140.485291 10647.31348 259.974091 186.097076 21000 12.22466 0.965948 0.765434 0.991974 43.570076 0.84346 1 1 1 1 1 1 1 1 1 1 1 1 1 4618.336426 11186.60553 0.010444892 0.012607284 0.828480703 -0.081717603
3 2690 41020 22398.27539 191.544113 19423.33203 563.026672 182.295258 22100 12.22466 0.958591 0.635231 0.981178 39.781908 0.725978 32257.61914 148.338242 31307.45898 308.708405 188.813965 26200 12.22466 0.960182 0.500153 0.989868 104.492196 0.571603 1 1 1 0 1 1 1 1 1 0 1 1 1 22206.73128 32109.2809 0.050223041 0.036187101 1.387871356 0.142349213
4 2930 41020 8630.765625 62.985294 7434.678711 154.292358 184.033096 22200 20.001438 0.973019 0.846367 0.996384 55.937739 0.847213 19104.6582 141.25 18040.85156 288.990845 188.813965 24900 20.001438 0.955579 0.651207 0.990891 66.108178 0.744237 1 1 1 1 1 1 1 1 1 0 1 1 1 8567.780331 18963.4082 0.019377007 0.021371727 0.906665487 -0.042552916
5 3190 41020 16285.49609 163.102936 15840.54102 309.930298 189.655014 25000 12.22466 0.95997 0.679947 0.989655 52.545673 0.777082 31542.89063 208.352936 30947.54492 340.178436 190.659378 26400 12.22466 0.967393 0.500069 0.991432 92.724545 0.571507 1 1 1 0 1 1 1 1 1 0 1 1 1 16122.39316 31334.53769 0.036462621 0.035313967 1.03252689 0.013901371
6 3440 41010 13856.1543 101.058823 13502.33984 281.007233 188.307541 24600 7.539864 0.964286 0.740433 0.990814 49.308888 0.826955 31662.82617 262.602936 30187.78125 436.499176 184.551254 24800 7.539864 0.966794 0.501816 0.985321 72.538112 0.573504 1 1 1 1 1 1 1 1 1 0 1 1 1 13755.09547 31400.22324 0.031108708 0.035387995 0.8790752 -0.055973972
7 3680 41010 12161.2207 68.794121 11039.29981 158.27301 189.990387 23600 17.534674 0.967595 0.776566 0.995667 76.836984 0.836381 26682.58789 255.338242 23014.52148 339.531738 183.686844 23100 17.534674 0.955646 0.502243 0.991676 78.586432 0.573992 1 1 1 1 1 1 1 1 1 0 1 1 1 12092.42658 26427.24965 0.027348394 0.029783462 0.918240929 -0.037043353
8 3940 41010 11523.91309 137.573532 10817.75684 405.293793 186.438858 22900 7.539864 0.956239 0.774353 0.993774 28.43348 0.842838 21623.75586 200.926468 22684.32227 340.720337 190.32518 25900 7.539864 0.971245 0.55452 0.989075 63.464823 0.633737 1 1 1 1 1 1 1 1 1 0 1 1 1 11386.33955 21422.82939 0.025751498 0.02414349 1.066602154 0.028002457
9 4190 41010 9327.644531 121.235291 7956.42627 182.496628 185.925949 22800 7.539864 0.967242 0.83857 0.995399 51.111325 0.843771 18467.44922 170.323532 16914.91406 228.944595 189.150833 24900 7.539864 0.965956 0.649368 0.993698 80.663399 0.742135 1 1 1 1 1 1 1 1 1 0 1 1 1 9206.40924 18297.12569 0.020821339 0.020620827 1.009723722 0.00420256
10 4430 41000 10299.7832 139.735291 8085.521484 283.951355 181.595459 21200 20.368406 0.950084 0.827499 0.991356 36.273055 0.851645 24732.85547 239.147064 22096.14648 323.681458 190.32518 24300 20.368406 0.967757 0.575294 0.991882 76.411098 0.657479 1 1 1 1 1 1 1 1 1 0 1 1 1 10160.04791 24493.70841 0.022978101 0.027604365 0.832408234 -0.079663632
11 4690 41010 12085.44727 50.14706 10677.14648 146.645096 187.630173 22800 7.539864 0.951942 0.782303 0.994637 82.412898 0.840672 27848.93555 139.676468 26462.83594 308.846588 188.138428 24900 7.539864 0.963251 0.500122 0.989723 90.170773 0.571568 1 1 1 1 1 1 1 1 1 0 1 1 1 12035.30021 27709.25908 0.027219196 0.031228285 0.871619965 -0.059672831
12 4940 41000 5485.262695 123.382355 4144.986816 338.743805 185.754669 21300 12.81627 0.959477 0.904266 0.988831 16.192954 0.844082 9933.621094 102.779411 8637.582031 233.903595 187.969162 24000 12.81627 0.962182 0.808937 0.991417 42.468869 0.840056 1 1 1 1 1 1 1 1 1 1 1 1 1 5361.88034 9830.841683 0.012126501 0.011079341 1.094514628 0.03922157
13 5190 41000 17329.25195 56.705883 14734.85059 147.102768 183.686844 22200 12.81627 0.956234 0.70665 0.996101 117.803711 0.804433 33513.57813 113.867645 30476.74023 226.787949 187.630173 24500 12.81627 0.966815 0.50013 0.99482 147.774952 0.571577 1 1 1 1 1 1 1 1 1 0 1 1 1 17272.54607 33399.71048 0.039063822 0.037641413 1.037788401 0.016108812
14 5440 41010 7345.811035 204.617645 7039.868164 546.13916 190.157852 23800 7.539864 0.97839 0.848015 0.982262 13.450438 0.836077 16353.24414 214.352936 16758.89063 383.591492 190.659378 25400 7.539864 0.968129 0.651443 0.989052 42.631926 0.744507 1 1 1 1 1 1 1 1 1 0 1 1 1 7141.19339 16138.89121 0.016150619 0.018188501 0.887957654 -0.051607745
15 5690 41000 25852.24219 63.470589 23097.92773 117.541031 184.551254 25200 12.81627 0.951005 0.56691 0.997101 219.942279 0.647897 34999.28125 146.779419 30761.61914 230.768982 187.120529 26400 12.81627 0.951772 0.500465 0.992531 151.663716 0.57196 1 1 1 0 1 1 1 1 1 0 1 1 1 25788.7716 34852.50183 0.058324232 0.039278706 1.48488169 0.171691852
16 5940 41000 11662.9834 100.220589 9896.908203 185.724304 190.992981 23700 12.81627 0.969468 0.800621 0.994354 62.797292 0.834558 24910.5293 167.485291 22668.04492 351.211578 189.319046 25100 12.81627 0.961388 0.57177 0.990326 70.927415 0.653451 1 1 1 1 1 1 1 1 1 0 1 1 1 11562.76281 24743.04401 0.0261505 0.027885366 0.937785782 -0.027896356
17 6200 41000 5549.410156 98.676468 4451.789551 296.958191 185.754669 19500 10.660278 0.946085 0.898315 0.993767 18.687513 0.844082 11047.75879 92.014709 9591.962891 182.36821 184.033096 22000 10.660278 0.940385 0.7995 0.994339 60.579411 0.847213 1 1 1 1 1 1 1 1 1 1 1 1 1 5450.733688 10955.74408 0.012327452 0.012347104 0.998408431 -0.00069176
18 6440 41000 8943.630859 81.411766 7224.367188 201.138275 189.487106 23000 12.81627 0.958845 0.849144 0.99366 44.465087 0.837296 19613.37891 116.720589 17466.58008 228.028534 191.49231 25100 12.81627 0.968288 0.658051 0.994133 86.012827 0.752058 1 1 1 1 1 1 1 1 1 0 1 1 1 8862.219093 19496.65832 0.020042914 0.021972699 0.912173512 -0.039922543
19 2190 41260 11553.48828 61.35294 10788.8584 150.158005 185.583237 22100 7.539864 0.959735 0.78051 0.995514 76.942207 0.844394 27842.11133 92.911766 27410.38281 208.324219 190.992981 24400 7.539864 0.966296 0.500107 0.993866 133.647981 0.571551 1 1 1 1 1 1 1 1 1 0 1 1 1 11492.13534 27749.19956 0.025990767 0.031273298 0.831084967 -0.080354573
20 2440 41270 14200.24512 93.470589 14721.19629 188.383102 187.630173 20800 12.22466 0.956278 0.681465 0.995224 75.379612 0.778817 27298.78516 97.485291 28632.89453 177.137314 183.686844 22900 12.22466 0.950022 0.500229 0.995461 154.110868 0.57169 1 1 1 0 1 1 1 1 1 0 1 1 1 14106.77453 27201.29987 0.031904071 0.030655816 1.040718373 0.017333222

Total number of rows: 5184

Table truncated, full table size 1757 Kbytes.




Supplementary data files not provided
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