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Sample GSM11677 Query DataSets for GSM11677
Status Public on May 10, 2004
Title GC2_DT104_3hr H2O2_2d663_1
Sample type genomic
 
Channel 1
Source name DT104 2hr H2O2 gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name DT104 log phase gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description DT104 exposed to 2mM H2O2 for 3hr compared to DT104 untreated log phase gDNA. Treated sample labeled with Cy3.
User - Fblackmer
Date_of_Scan = Tue Feb 04 13:56:30 2003
Keywords = Salmonella
 
Submission date Oct 17, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE813 DT104_hydrogen_peroxide_2mM_DNA

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2050 3530 8501.040039 300.617645 10969.88086 829.301208 188.138428 22400 20.339657 0.964374 0.658409 0.973183 10.250847 0.752468 3095.671875 100.632355 2966.0979 210.16539 179.834061 19500 20.339657 0.942825 0.91819 0.9935 14.729694 0.854847 1 1 1 0 1 1 1 1 1 1 1 1 1 8200.422394 2995.03952 0.035672116 0.00684306 5.212889611 0.717078528
2 2300 3530 741.718567 66.573532 657.987854 319.81308 187.120529 16700 20.339657 0.952761 0.981918 0.996101 2.319225 0.61846 738.601379 123.882355 663.102539 276.024963 185.754669 14800 20.339657 0.959967 0.981209 0.990837 2.67585 0.71356 1 1 1 1 1 0 1 1 1 1 1 0 1 675.145035 614.719024 0.002936904 0.001404509 2.091054188 0.320365287
3 2550 3530 3628.328369 135.691177 3048.261719 356.442047 187.799744 19800 20.339657 0.956425 0.928871 0.987114 10.179294 0.840364 3659.619873 112.485291 2964.337158 225.921951 189.655014 19200 20.339657 0.964314 0.930511 0.994125 16.198602 0.836991 1 1 1 1 1 1 1 1 1 1 1 1 1 3492.637192 3547.134582 0.01519309 0.008104486 1.874652048 0.272920671
4 2800 3530 1356.510742 62.14706 1042.25708 144.852295 187.290573 18600 20.339657 0.963283 0.971939 0.99543 9.364786 0.84129 1446.355713 33.808823 1168.167969 112.176201 190.992981 19400 20.339657 0.973045 0.965408 0.997139 12.893606 0.834558 1 1 1 1 1 1 1 1 1 1 1 1 1 1294.363682 1412.54689 0.005630526 0.003227384 1.744609802 0.241698308
5 3050 3520 3669.73584 71.470589 3161.619873 208.263504 186.438858 23100 16.670359 0.949694 0.931931 0.991646 17.620638 0.842838 3835.73584 33.661766 2960.156982 91.819359 185.583237 21200 16.670359 0.969155 0.93499 0.99691 41.774805 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 3598.265251 3802.074074 0.015652576 0.008686971 1.801845144 0.255717464
6 3300 3520 2554.346924 182.941177 2228.13208 298.398651 187.120529 19600 16.670359 0.960895 0.94545 0.993362 8.560183 0.841599 2983.536133 97.632355 2642.724854 197.828278 188.476501 20700 16.670359 0.961177 0.940491 0.994637 15.081444 0.839134 1 1 1 1 1 1 1 1 1 1 1 1 1 2371.405747 2885.903778 0.010315696 0.006593707 1.564475924 0.194368884
7 3550 3520 2561.981934 463.867645 2101.313232 1861.581055 187.290573 22100 16.670359 0.951686 0.94825 0.925049 1.37624 0.366997 2797.964355 191.852936 2349.116699 562.442993 188.982483 22500 16.670359 0.970136 0.943207 0.985008 4.974663 0.838214 1 1 1 1 0 0 1 1 1 1 1 1 1 2098.114289 2606.111419 0.009126868 0.005954438 1.532784235 0.185481025
8 3800 3520 3051.795898 68.779411 2431.948975 140.426102 183.513474 20100 16.670359 0.948303 0.941849 0.996422 21.732398 0.848157 3324.248779 82.411766 2612.884521 224.965744 189.487106 20500 16.670359 0.970177 0.940666 0.992928 14.776689 0.837296 1 1 1 1 1 1 1 1 1 1 1 1 1 2983.016487 3241.837013 0.012976223 0.007406942 1.751900111 0.24350934
9 4050 3520 2842.676758 120.338234 2129.809082 225.250488 183.166229 19800 16.670359 0.940412 0.945694 0.99337 12.620069 0.848789 2491.099121 93.794121 2034.612549 225.259628 187.799744 22200 16.670359 0.970541 0.948021 0.991997 11.058791 0.840364 1 1 1 1 1 1 1 1 1 1 1 1 1 2722.338524 2397.305 0.011842265 0.005477357 2.16203988 0.3348637
10 4300 3510 1731.264648 138.705887 1420.53833 310.305786 188.138428 20400 18.495949 0.964867 0.962967 0.989662 5.579221 0.839748 2095.201904 120.323532 1711.178345 249.169632 191.824478 21300 18.495949 0.966885 0.958702 0.993462 8.408737 0.833046 1 1 1 1 1 1 1 1 1 1 1 1 1 1592.558761 1974.878372 0.006927685 0.004512198 1.535323773 0.186199975
11 4550 3510 2258.032959 65.397057 1866.651611 150.381714 190.826248 21300 18.495949 0.964407 0.953415 0.996231 15.015343 0.834861 3208.879395 139.985291 2843.394043 221.671021 191.326019 23200 18.495949 0.967414 0.933525 0.99408 14.475863 0.833953 1 1 1 1 1 1 1 1 1 1 1 1 1 2192.635902 3068.894104 0.009538041 0.007011803 1.360283659 0.133629481
12 4800 3520 1066.227295 64 780.762207 123.006615 186.097076 19800 16.670359 0.958547 0.978096 0.996521 8.668048 0.84346 1213.285767 126.514709 1056.154053 285.410767 188.813965 22400 16.670359 0.963601 0.972893 0.994385 4.251016 0.83852 1 1 1 1 1 1 1 1 1 1 1 1 1 1002.227295 1086.771058 0.004359723 0.002483052 1.755791834 0.244473025
13 5050 3520 3210.731445 132.867645 2680.205811 306.170898 184.033096 21600 16.670359 0.96047 0.940079 0.992996 10.48673 0.847213 5414.947266 267.985291 3090.620361 429.592407 168.880341 17100 16.670359 0.90513 0.921715 0.987534 12.604849 0.874763 1 1 1 1 1 1 1 1 1 1 1 1 1 3077.8638 5146.961975 0.013388812 0.011759768 1.138526912 0.056343301
14 5300 3510 1619.427856 403.132355 1299.745605 807.128296 187.630173 21500 18.495949 0.96079 0.96167 0.972641 2.006407 0.535042 2061.939453 242.338242 1458.939087 410.109283 188.307541 21500 18.495949 0.959205 0.963806 0.986343 5.02778 0.839441 1 1 1 1 1 0 1 1 1 1 1 1 1 1216.295501 1819.601211 0.005290927 0.004157421 1.272646378 0.104707746
15 5550 3510 5077.435547 395.955872 3640.897461 1024.988647 188.476501 22500 18.495949 0.967605 0.918816 0.965103 4.953651 0.839134 5699.583496 323.632355 4781.963379 491.503235 191.990341 24500 18.495949 0.972448 0.892479 0.986526 11.596228 0.832745 1 1 1 1 1 1 1 1 1 1 1 1 1 4681.479675 5375.951141 0.020364596 0.012282962 1.657954821 0.219572692
16 5810 3510 1973.641113 76.647057 1541.401855 156.822342 185.067963 20900 10.517632 0.952399 0.961052 0.995598 12.585204 0.845331 2260.25 195.073532 1890.96814 311.098083 185.067963 22400 10.517632 0.962567 0.95475 0.990768 7.265394 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 1896.994056 2065.176468 0.008251989 0.004718511 1.748854444 0.242753665
17 6050 3500 1431.816772 155.323532 1288.821411 336.566345 186.097076 19100 24.623146 0.956035 0.961891 0.98716 4.254189 0.840107 1441.844482 190.529419 1283.095337 318.762054 188.813965 22500 24.623146 0.971584 0.96624 0.991707 4.523263 0.83852 1 1 1 1 1 1 1 1 1 1 1 1 1 1276.49324 1251.315063 0.005552789 0.002859002 1.942212341 0.288296709
18 6310 3510 1664.829224 87.544121 1271.489868 176.139221 184.551254 20500 10.517632 0.961947 0.96701 0.994759 9.45178 0.84627 2407.637939 174.132355 1897.681396 287.354523 189.822784 23200 10.517632 0.963584 0.954865 0.992172 8.378632 0.836686 1 1 1 1 1 1 1 1 1 1 1 1 1 1577.285103 2233.505584 0.006861244 0.005103109 1.344522337 0.128568022
19 2050 3770 1432.300537 46.691177 1175.828369 157.490707 182.469788 18300 16.670359 0.93268 0.970398 0.996078 9.094508 0.850055 1258.819702 65.558823 1084.004395 146.893753 183.339935 18300 16.670359 0.952916 0.970551 0.996292 8.569593 0.848473 1 1 1 1 1 1 1 1 1 1 1 1 1 1385.60936 1193.260879 0.006027448 0.00272636 2.210804137 0.344550269
20 2310 3770 2724.70752 74.294121 2883.680664 181.310654 184.551254 18800 6.813324 0.951405 0.929474 0.995232 15.02784 0.84627 2675.785645 68.705879 2627.705811 152.507599 181.945694 18200 6.813324 0.942498 0.935928 0.995041 17.545261 0.851008 1 1 1 1 1 1 1 1 1 1 1 1 1 2650.413399 2607.079766 0.011529388 0.00595665 1.935548964 0.286804162

Total number of rows: 5184

Table truncated, full table size 1750 Kbytes.




Supplementary data files not provided
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