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Sample GSM1159694 Query DataSets for GSM1159694
Status Public on Apr 01, 2014
Title Female_WT 4
Sample type RNA
 
Source name Mouse liver tissue
Organism Mus musculus
Characteristics gender: female
genotype: Wild-type
tissue: liver
age: 2 months
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation using corresponding functions in the R package lumi.
 
Submission date Jun 10, 2013
Last update date Apr 01, 2014
Contact name deqiang sun
E-mail(s) dsun@tamu.edu
Phone (713) 677-7439
Organization name Texas A&M University
Street address 2121 W Holcombe Blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL6887
Series (2)
GSE47791 Genome-wide analysis of liver gene expression in male and female mice.
GSE47899 Genome-wide analysis of liver in male and female mice

Data table header descriptions
ID_REF
VALUE quantile normalized
18_661_F_detpvalue

Data table
ID_REF VALUE 18_661_F_detpvalue
ILMN_1212602 -3.547212 0.6442308
ILMN_1212603 -0.09605083 0.4529915
ILMN_1212605 352.1415 0
ILMN_1212607 45.09727 0
ILMN_1212612 47.41851 0
ILMN_1212614 -14.20386 0.9797009
ILMN_1212619 5.413592 0.2061966
ILMN_1212623 -7.233026 0.8130342
ILMN_1212625 390.5604 0
ILMN_1212626 108.1348 0
ILMN_1212628 -11.36559 0.9358974
ILMN_1212632 18.75058 0.03739316
ILMN_1212633 60.56791 0
ILMN_1212636 1047.306 0
ILMN_1212637 4705.938 0
ILMN_1212638 9784.744 0
ILMN_1212639 39.42945 0
ILMN_1212644 -2.805981 0.6014957
ILMN_1212645 4997.202 0
ILMN_1212646 355.1892 0

Total number of rows: 45281

Table truncated, full table size 1333 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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