|
| Status |
Public on May 31, 2006 |
| Title |
2522 - mAdbID:61389 |
| Sample type |
RNA |
| |
|
| Source name |
2522
|
| Organism |
Homo sapiens |
| Characteristics |
Gender: male
Age: 13
Tissue: lymph node
Disease state: Lymphoma
Individual: 2522
Clinical info: Submitting diagnosis: Burkitt/Burkitt-like Lymphoma
Clinical info: Final pathology diagnosis: BL
Clinical info: Final microarray diagnosis: BL
Clinical info: Follow up status: alive
Clinical info: Follow up years: 5.58
Clinical info: Chemotherapy: Intensive Regimen
Clinical info: ECOG performance status: 2
Clinical info: Stage: 3/4
Clinical info: LDH ratio: 1.64
Clinical info: Number of nodal sites: 1
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Sample Extraction Protocol
|
| Label |
biotin
|
| Label protocol |
Affymetrix Labeling Protocol
Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| |
|
| Hybridization protocol |
Affymetrix Hybridization Protocol
Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
|
| Description |
mAdb experiment ID: 61389
|
| Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
|
| |
|
| Submission date |
May 30, 2006 |
| Last update date |
May 30, 2006 |
| Contact name |
Sandeep Dave |
| E-mail(s) |
daves@mail.nih.gov
|
| Organization name |
National Cancer Institute
|
| Street address |
9000 Rockville Pike
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL3706 |
| Series (1) |
| GSE4732 |
Expression Data from Burkitt Lymphoma Patients |
|
