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Sample GSM1117289 Query DataSets for GSM1117289
Status Public on Apr 09, 2013
Title Blood - Pre-mortem blood draw - SM-2AXUB
Sample type RNA
 
Source name Whole Blood - Pre-mortem blood draw
Organism Homo sapiens
Characteristics gender: Male
age: 60-69 years
rin: 7.6
tissue: Blood
tissue_detail: Whole Blood
ischemic_time: 0-(-3) hours
Extracted molecule total RNA
Extraction protocol Affymetrix protocol
Label biotin
Label protocol Affymetrix protocol
 
Hybridization protocol Affymetrix protocol
Scan protocol Affymetrix protocol
Description GTEX-OIZF-0006-SM-2AXUB
Data processing Probe level data were summarized using custom probeset definitions provided by the BrainArrray resource (http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp). RMA normalization was using Ensembl gene definitions.
probe group file: HuGene11stv1_Hs_ENSG.cdf
 
Submission date Apr 08, 2013
Last update date Apr 09, 2013
Contact name Kristin Ardlie
Organization name The Broad Institute of MIT and Harvard
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL16977
Series (1)
GSE45878 Affymetrix expression data from GTEx

Data table header descriptions
ID_REF
VALUE RMA normalized gene level expression values based on Ensembl gene definitions.

Data table
ID_REF VALUE
ENSG00000000003_at 2.92396
ENSG00000000005_at 2.38401
ENSG00000000419_at 7.6505
ENSG00000000457_at 7.09836
ENSG00000000460_at 4.02075
ENSG00000000938_at 10.80463
ENSG00000000971_at 2.67475
ENSG00000001036_at 6.09479
ENSG00000001084_at 5.18929
ENSG00000001167_at 8.648
ENSG00000001460_at 3.98407
ENSG00000001461_at 5.8968
ENSG00000001497_at 5.41308
ENSG00000001561_at 3.44619
ENSG00000001617_at 3.61319
ENSG00000001626_at 1.84796
ENSG00000001629_at 7.18166
ENSG00000001631_at 6.58276
ENSG00000002016_at 5.87704
ENSG00000002330_at 4.61575

Total number of rows: 22704

Table truncated, full table size 596 Kbytes.




Supplementary file Size Download File type/resource
GSM1117289_GTEX-OIZF-0006-SM-2AXUB.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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