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Sample GSM1102737 Query DataSets for GSM1102737
Status Public on Mar 22, 2013
Title Digital Genomic Footprinting assay of CD3 Primary Cells, cord blood; DGF.DS17706
Sample type SRA
 
Source name flow sorted CD3 Primary Cells, from cord blood; DGF.DS17706
Organism Homo sapiens
Characteristics sample alias: CD3.CB6_1-4-2011
sample common name: CD3 Cord Blood Primary Cells
molecule: genomic DNA
disease: None
biomaterial_provider: FHCRC HEIMFELD
biomaterial_type: Primary Cell
cell_type: CD3 Primary Cells
markers: CD3
donor_id: CB6 1-4-2011
donor_age: NA
donor_health_status: NA
donor_sex: Unknown
donor_ethnicity: NA
passage_if_expanded: NA
experiment_type: Digital Genomic Footprinting
extraction_protocol: Qiagen minElut
dnase_protocol: http://www.roadmapepigenomics.org/protocols/type/experimental/
Extracted molecule genomic DNA
Extraction protocol Library construction protocol: Single read - Illumina
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
 
Description sample_term_id: CL_0000084
assay_term_id: OBI_0001853
nucleic_acid_term_id: SO_0000352
Design description: Digital Genomic Footprinting determination via DNase-seq
Library name: DGF.DS17706
EDACC Genboree Experiment Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUniversity%20of%20Washington%2FEXPERIMENT%2FEDACC.15519
EDACC Genboree Sample Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUniversity%20of%20Washington%2FSAMPLE%2FEDACC.7021
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For data usage terms and conditions, please refer to:
http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies
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Data processing Various levels of processed data files will be made available as this project proceeds.
 
Submission date Mar 20, 2013
Last update date May 15, 2019
Contact name Northwest REMC
E-mail(s) rharris1@bcm.tmc.edu
Organization name University of Washington
Street address -
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL11154
Series (1)
GSE18927 University of Washington Human Reference Epigenome Mapping Project
Relations
SRA SRX252603
BioSample SAMN00254251

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
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