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Sample GSM1081248 Query DataSets for GSM1081248
Status Public on Apr 01, 2013
Title GM20512_Dex_8h
Sample type RNA
 
Source name Lymphoblastoid cell lines
Organism Homo sapiens
Characteristics treatment: Dex
cell line: GM20512
time: 8h
Biomaterial provider Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM20512
Treatment protocol Cells were treated with either EtOH (vehicle) or 1micromolar dexamethasone
Growth protocol LCLs were grown according to standard protocols in RPMI supplemented with 15% charcoal-stripped fetal bovine serum
Extracted molecule total RNA
Extraction protocol RNA was extracted with the QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with LUMI in R
 
Submission date Feb 11, 2013
Last update date Apr 01, 2013
Contact name Joseph C Maranville
E-mail(s) jcmaranville@uchicago.edu
Phone 7738345239
Organization name 920 E. 58th Street
Street address 920 E. 58th Street
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platform ID GPL6947
Series (2)
GSE44248 Genetic, functional and molecular features of glucocorticoid receptor binding (expression)
GSE45640 Genetic, functional and molecular features of glucocorticoid receptor binding

Data table header descriptions
ID_REF
VALUE quantile normalized
30_Detection_pvalue

Data table
ID_REF VALUE 30_Detection_pvalue
ILMN_1343291 13.83369355 0
ILMN_1343295 13.3188338 0
ILMN_1651199 7.175735244 0.9868248
ILMN_1651209 7.098761685 0.5480896
ILMN_1651210 7.082260187 0.8115942
ILMN_1651221 7.109205753 0.2173913
ILMN_1651228 12.6840076 0
ILMN_1651229 7.738840686 0.09090909
ILMN_1651230 7.047302577 0.5955204
ILMN_1651232 7.171203664 0.05665349
ILMN_1651235 6.994624738 0.4808959
ILMN_1651236 7.114261852 0.4242424
ILMN_1651237 8.592686041 0
ILMN_1651238 7.123711889 0.1857708
ILMN_1651249 7.015638527 0.8115942
ILMN_1651253 7.047302577 0.3227932
ILMN_1651254 7.306529639 0.1857708
ILMN_1651259 7.349049093 0.07905138
ILMN_1651260 7.194409411 0.4242424
ILMN_1651262 12.85193579 0

Total number of rows: 48802

Table truncated, full table size 1620 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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