NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1071362 Query DataSets for GSM1071362
Status Public on Dec 31, 2013
Title SPN-7
Sample type RNA
 
Source name solid-pseudopapillary neoplasm
Organism Homo sapiens
Characteristics gender: female
age: 17
tissue: Solid-pseudopapillary neoplasm of pancreas (SPN)
Extracted molecule total RNA
Extraction protocol Total RNA was obtained from each independent tissue of patient and extracted using TRIzol Reagent (Invitrogen). RNA quality control was performed with Bio-Rad Experion.
Label Cy3-streptavidin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Total RNA was obtained from each independent tissue of patient
Data processing The data were normalised using quantile normalization method with beadarray version 1.10 and lumi version 1.8.3 in R/Bioconductor package.
 
Submission date Jan 28, 2013
Last update date Dec 31, 2013
Contact name minhee park
Organization name student
Street address shinchondong
City seoul
ZIP/Postal code 120-752
Country South Korea
 
Platform ID GPL10558
Series (2)
GSE43795 Gene expression of pancreatic tumors
GSE43797 Characterization of mRNA and microRNA expression profiles in solid-pseudopapillary neoplasm of pancreas, ductal adenocarcinoma and pancreatic neuroendocrine tumors

Data table header descriptions
ID_REF
VALUE The value was log2 transformed and quantile normalized

Data table
ID_REF VALUE
ILMN_1343291 15.08925351
ILMN_1343295 12.43653961
ILMN_1651199 6.454857441
ILMN_1651209 6.920794753
ILMN_1651210 6.553338132
ILMN_1651221 6.858631182
ILMN_1651228 13.91147031
ILMN_1651229 9.83746781
ILMN_1651230 6.246957111
ILMN_1651232 6.680613811
ILMN_1651235 6.321594136
ILMN_1651236 6.467351084
ILMN_1651237 6.177063916
ILMN_1651238 6.179184892
ILMN_1651249 6.596259184
ILMN_1651253 6.420663863
ILMN_1651254 12.61592094
ILMN_1651259 7.292167755
ILMN_1651260 5.90291179
ILMN_1651262 12.57943342

Total number of rows: 47231

Table truncated, full table size 1147 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap