|
| Status |
Public on Apr 19, 2013 |
| Title |
WT_SCC_expression_Doxo_2_(422156) |
| Sample type |
RNA |
| |
|
| Source name |
WT_SCC_expression_Doxo
|
| Organism |
Mus musculus |
| Characteristics |
cell type: squamous cell carcinoma
genotype/variation: wild-type
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted using the Qiagen RNeasy kit.
|
| Label |
Cy3
|
| Label protocol |
Standard NimbleGen protocol
|
| |
|
| Hybridization protocol |
Standard NimbleGen protocol
|
| Scan protocol |
Standard NimbleGen protocol
|
| Description |
Expression profiling of wild-type SCC cells after 18 hours of doxorubicin treatment.
|
| Data processing |
RMA normalization by NimbleGen. Gene RMA calls calculated from 8 samples per gene by NimbleGen are included as a supplementary file.
|
| |
|
| Submission date |
Jan 25, 2013 |
| Last update date |
Apr 20, 2013 |
| Contact name |
Jorja Henikoff |
| E-mail(s) |
jorja@fhcrc.org
|
| Phone |
206-667-4850
|
| Organization name |
Fred Hutchinson Cancer Research Center
|
| Department |
Basic Sciences
|
| Lab |
Henikoff
|
| Street address |
1100 Fairview AV N, A1-162
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109-1024 |
| Country |
USA |
| |
|
| Platform ID |
GPL9899 |
| Series (1) |
| GSE43753 |
Doxorubicin enhances nucleosome turnover around promoters |
|
