|
| Status |
Public on Jan 21, 2013 |
| Title |
Patient genomic DNA from sample 88 |
| Sample type |
genomic |
| |
|
| Source name |
PBL
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: PBL
disease state: rheumatoid arthritis
subject: Patient
age: 69
gender: f
smoking status: ex
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from PBLs using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
|
| Data processing |
minfi, R
|
| |
|
| Submission date |
Dec 12, 2012 |
| Last update date |
Mar 17, 2015 |
| Contact name |
Yun Liu |
| E-mail(s) |
yliu39@fudan.edu.cn
|
| Organization name |
Fudan University
|
| Street address |
130 Dong An Road
|
| City |
Shanghai |
| ZIP/Postal code |
200032 |
| Country |
China |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE42861 |
Differential DNA methylation in Rheumatoid arthritis |
|
