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Sample GSM1040313 Query DataSets for GSM1040313
Status Public on Dec 03, 2013
Title H9(p40)_undiff_hES
Sample type genomic
 
Source name undifferentiated hES
Organism Homo sapiens
Characteristics cell type: undiff_hES
cell origin: blastocyst
Extracted molecule genomic DNA
Extraction protocol Genomic DNA extraction and purification from cultured cells was carried out using a Gentra Puregene kit (QIAGEN).
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol bisulfite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Data processing Illumina GenomeStudio software
Unmethylated(Signal_A) and methylated(Signal_B) signal intensities
 
Submission date Nov 21, 2012
Last update date Dec 03, 2013
Contact name Shinya Yamanaka
E-mail(s) yamanaka@cira.kyoto-u.ac.jp
Phone 81-75-366-7041
Organization name Center for iPS Cell Research and Applicaton (CiRA), Kyoto University
Street address 53 Kawahara-machi, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
 
Platform ID GPL8490
Series (2)
GSE42448 Comparison of DNA methylation profilings between hESCs and hiPSCs
GSE49053 Differentiation defective phenotypes revealed by large scale analyses of human pluripotent stem cells

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000292 0.8125719 3.678E-38
cg00002426 0.1659382 3.678E-38
cg00003994 0.1110198 3.678E-38
cg00005847 0.1669798 3.678E-38
cg00006414 0.09114391 3.678E-38
cg00007981 0.06270283 3.678E-38
cg00008493 0.9296801 3.678E-38
cg00008713 0.03799849 3.678E-38
cg00009407 0.02628093 3.678E-38
cg00010193 0.5177059 3.678E-38
cg00011459 0.8376465 3.678E-38
cg00012199 0.02391577 3.678E-38
cg00012386 0.05717174 3.678E-38
cg00012792 0.03817131 3.678E-38
cg00013618 0.7301284 3.678E-38
cg00014085 0.05480616 3.678E-38
cg00014837 0.7280409 3.678E-38
cg00015770 0.09617426 3.678E-38
cg00016968 0.3547619 3.678E-38
cg00019495 0.6684992 3.678E-38

Total number of rows: 27578

Table truncated, full table size 846 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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