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Sample GSM1033353 Query DataSets for GSM1033353
Status Public on Nov 08, 2012
Title UW_AffyExonArray_H7-hESC_diffProtA_2d_1
Sample type RNA
 
Source name H7-hESC
Organism Homo sapiens
Characteristics donor_id: ENCDO221AAA
biomaterial_type: in vitro differentiated cells
cell_type: cardiac mesoderm
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: AffyExonArray
datatype description: Affymetrix Exon Microarray
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
treatment: diffProtA_2d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 2 days, lineage: mesoderm
labexpid: DS15447
replicate: 1
Biomaterial provider WiCell Research Institute
Treatment protocol diffProtA_2d
Extracted molecule total RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Label biotin
Label protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
 
Hybridization protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Scan protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Description http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
 
Submission date Nov 08, 2012
Last update date Jul 29, 2016
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL5188
Series (1)
GSE19090 Exon arrays of ENCODE tier 1, tier 2 and tier 3 cell types

Data table header descriptions
ID_REF
VALUE quantile normalized with PM-GCBG background correction and PLIER (Probe Logarithmic Intensity Error) summarized

Data table
ID_REF VALUE
2315101 162.6714
2315102 266.4409
2315104 245.8868
2315105 122.299
2315107 354.828
2315112 101.8546
2315114 89.22459
2315116 100.6608
2315118 1194.324
2315120 502.1853
2315126 38.22756
2315132 16.26579
2315138 189.6587
2315140 63.63225
2315142 21.46318
2315144 29.50146
2315146 85.06233
2315148 202.266
2315149 578.3
2315150 209.064

Total number of rows: 1384231

Table truncated, full table size 22718 Kbytes.




Supplementary file Size Download File type/resource
GSM1033353_exon.H7-hESC-DS15447-rep1.exonlvl_exonanaly.hg19.bed.gz 21.1 Mb (ftp)(http) BED
GSM1033353_hg19_wgEncodeUwAffyExonArrayH7esDiffa2dRawDataRep1.CEL.gz 24.8 Mb (ftp)(http) CEL
GSM1033353_hg19_wgEncodeUwAffyExonArrayH7esDiffa2dSimpleSignalRep1.broadPeak.gz 21.1 Mb (ftp)(http) BROADPEAK
Processed data provided as supplementary file
Raw data provided as supplementary file
Processed data included within Sample table

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