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Sample GSM1033351 Query DataSets for GSM1033351
Status Public on Nov 08, 2012
Title UW_AffyExonArray_H7-hESC_diffProtA_14d_1
Sample type RNA
 
Source name H7-hESC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: AffyExonArray
datatype description: Affymetrix Exon Microarray
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
treatment: diffProtA_14d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 14 days, cell sorting and specific growth factors were used, lineage: mesoderm
labexpid: DS15446
replicate: 1
Biomaterial provider WiCell Research Institute
Treatment protocol diffProtA_14d
Extracted molecule total RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Label biotin
Label protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
 
Hybridization protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Scan protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Description http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
 
Submission date Nov 08, 2012
Last update date Apr 23, 2013
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL5188
Series (1)
GSE19090 Exon arrays of ENCODE tier 1, tier 2 and tier 3 cell types

Data table header descriptions
ID_REF
VALUE quantile normalized with PM-GCBG background correction and PLIER (Probe Logarithmic Intensity Error) summarized

Data table
ID_REF VALUE
2315101 96.50639
2315102 218.6858
2315104 255.1422
2315105 85.58802
2315107 367.0455
2315112 136.4251
2315114 64.29444
2315116 68.39143
2315118 1086.126
2315120 408.371
2315126 46.88754
2315132 18.63001
2315138 145.5294
2315140 46.42569
2315142 20.55571
2315144 16.93792
2315146 48.18573
2315148 193.0595
2315149 137.0572
2315150 163.6738

Total number of rows: 1384231

Table truncated, full table size 22742 Kbytes.




Supplementary file Size Download File type/resource
GSM1033351_exon.H7-hESC-DS15446-rep1.exonlvl_exonanaly.hg19.bed.gz 21.1 Mb (ftp)(http) BED
GSM1033351_hg19_wgEncodeUwAffyExonArrayH7esDiffa14dRawDataRep1.CEL.gz 24.0 Mb (ftp)(http) CEL
GSM1033351_hg19_wgEncodeUwAffyExonArrayH7esDiffa14dSimpleSignalRep1.broadPeak.gz 21.1 Mb (ftp)(http) BROADPEAK
Processed data provided as supplementary file
Raw data provided as supplementary file
Processed data included within Sample table
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