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Sample GSM1033349 Query DataSets for GSM1033349
Status Public on Nov 08, 2012
Title UW_AffyExonArray_H7-hESC_diffProtA_9d_2
Sample type RNA
 
Source name H7-hESC
Organism Homo sapiens
Characteristics donor_id: ENCDO221AAA
biomaterial_type: in vitro differentiated cells
cell_type: cardiac mesoderm
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: AffyExonArray
datatype description: Affymetrix Exon Microarray
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
treatment: diffProtA_9d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 9 days, lineage: mesoderm
labexpid: RS16722
replicate: 2
Biomaterial provider WiCell Research Institute
Treatment protocol diffProtA_9d
Extracted molecule total RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Label biotin
Label protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
 
Hybridization protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Scan protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Description http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
 
Submission date Nov 08, 2012
Last update date Jul 29, 2016
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL5188
Series (1)
GSE19090 Exon arrays of ENCODE tier 1, tier 2 and tier 3 cell types

Data table header descriptions
ID_REF
VALUE quantile normalized with PM-GCBG background correction and PLIER (Probe Logarithmic Intensity Error) summarized

Data table
ID_REF VALUE
2315101 112.4851
2315102 435.8767
2315104 599.6
2315105 72.4309
2315107 693.8923
2315112 168.1128
2315114 75.91095
2315116 124.8246
2315118 1350.615
2315120 673.0834
2315126 45.20543
2315132 8.809562
2315138 146.4424
2315140 60.25951
2315142 30.91689
2315144 12.54792
2315146 62.00077
2315148 269.8022
2315149 263.3958
2315150 262.2644

Total number of rows: 1384231

Table truncated, full table size 22703 Kbytes.




Supplementary file Size Download File type/resource
GSM1033349_exon.H7-hESC-RS16722-rep2.exonlvl_exonanaly.hg19.bed.gz 21.2 Mb (ftp)(http) BED
GSM1033349_hg19_wgEncodeUwAffyExonArrayH7esDiffa9dRawDataRep2.CEL.gz 25.3 Mb (ftp)(http) CEL
GSM1033349_hg19_wgEncodeUwAffyExonArrayH7esDiffa9dSimpleSignalRep2.broadPeak.gz 21.2 Mb (ftp)(http) BROADPEAK
Processed data provided as supplementary file
Raw data provided as supplementary file
Processed data included within Sample table

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