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Sample GSM1033347 Query DataSets for GSM1033347
Status Public on Nov 08, 2012
Title UW_AffyExonArray_H7-hESC_diffProtA_5d_2
Sample type RNA
 
Source name H7-hESC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: AffyExonArray
datatype description: Affymetrix Exon Microarray
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
treatment: diffProtA_5d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 5 days, lineage: mesoderm
labexpid: RS16721
replicate: 2
Biomaterial provider WiCell Research Institute
Treatment protocol diffProtA_5d
Extracted molecule total RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Label biotin
Label protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
 
Hybridization protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Scan protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Description http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwAffyExonArray
 
Submission date Nov 08, 2012
Last update date Apr 23, 2013
Contact name ENCODE DCC
E-mail encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL5188
Series (1)
GSE19090 Exon arrays of ENCODE tier 1, tier 2 and tier 3 cell types

Data table header descriptions
ID_REF
VALUE quantile normalized with PM-GCBG background correction and PLIER (Probe Logarithmic Intensity Error) summarized

Data table
ID_REF VALUE
2315101 178.3118
2315102 535.2643
2315104 765.5733
2315105 132.5873
2315107 504.4879
2315112 207.3997
2315114 115.2125
2315116 155.4721
2315118 906.5338
2315120 923.7383
2315126 42.83791
2315132 5.801195
2315138 156.1254
2315140 75.58292
2315142 35.72448
2315144 33.10188
2315146 94.00275
2315148 284.0424
2315149 552.2708
2315150 194.3671

Total number of rows: 1384231

Table truncated, full table size 22711 Kbytes.




Supplementary file Size Download File type/resource
GSM1033347_exon.H7-hESC-RS16721-rep2.exonlvl_exonanaly.hg19.bed.gz 21.2 Mb (ftp)(http) BED
GSM1033347_hg19_wgEncodeUwAffyExonArrayH7esDiffa5dRawDataRep2.CEL.gz 25.5 Mb (ftp)(http) CEL
GSM1033347_hg19_wgEncodeUwAffyExonArrayH7esDiffa5dSimpleSignalRep2.broadPeak.gz 21.2 Mb (ftp)(http) BROADPEAK
Processed data provided as supplementary file
Raw data provided as supplementary file
Processed data included within Sample table

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