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Sample GSM1024795 Query DataSets for GSM1024795
Status Public on Oct 24, 2012
Title UW_DnaseSeq_NT2-D1Rep2
Sample type SRA
Source name NT2-D1
Organism Homo sapiens
Characteristics biomaterial_type: immortalized cell line
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
line: NT2-D1
cell organism: human
cell description: malignant pluripotent embryonal carcinoma (NTera-2), "The NTERA-2 cl.D1 cell line is a pluripotent human testicular embryonal carcinoma cell line derived by cloning the NTERA-2 cell line." - ATCC. (PMID: 6694356)
cell karyotype: cancer
cell lineage: inner cell mass
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS14564
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider ATCC
Treatment protocol None
Growth protocol NT2-D1_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX201305
BioSample SAMN01780244
Named Annotation GSM1024795_hg19_wgEncodeUwDnaseNt2d1RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024795_hg19_wgEncodeUwDnaseNt2d1HotspotsRep2.broadPeak.gz 4.5 Mb (ftp)(http) BROADPEAK
GSM1024795_hg19_wgEncodeUwDnaseNt2d1PkRep2.narrowPeak.gz 1.7 Mb (ftp)(http) NARROWPEAK
GSM1024795_hg19_wgEncodeUwDnaseNt2d1RawRep2.bigWig 152.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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