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Sample GSM1024794 Query DataSets for GSM1024794
Status Public on Oct 24, 2012
Title UW_DnaseSeq_M059JRep2
Sample type SRA
Source name M059J
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: M059J
cell organism: human
cell description: malignant glioblastoma, glioma, lack DNA-dependent protein kinase activity, deficient in repair of DNA double strand breaks, the cells are negative for glial fibrillary acidic protein (GFAP), tumor specimen taken from a 33 year old
cell karyotype: cancer
cell lineage: ectoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS20497
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider ATCC
Treatment protocol None
Growth protocol M059J_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE54296
SRA SRX201304
BioSample SAMN01780243
Named Annotation GSM1024794_hg19_wgEncodeUwDnaseM059jRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024794_hg19_wgEncodeUwDnaseM059jHotspotsRep2.broadPeak.gz 3.2 Mb (ftp)(http) BROADPEAK
GSM1024794_hg19_wgEncodeUwDnaseM059jPkRep2.narrowPeak.gz 2.4 Mb (ftp)(http) NARROWPEAK
GSM1024794_hg19_wgEncodeUwDnaseM059jRawRep2.bigWig 160.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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