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Sample GSM1024793 Query DataSets for GSM1024793
Status Public on Oct 24, 2012
Title UW_DnaseSeq_RPMI-7951Rep2
Sample type SRA
Source name RPMI-7951
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: RPMI-7951
cell organism: human
cell description: Human Skin Malignant Melanoma Cells, This is a hyperdiploid human cell line with the modal chromosome number of 49, occurring in 24% of cells. Polyploid cells occurred at 22%, which is high.
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS20904
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider ATCC
Treatment protocol None
Growth protocol RPMI7951_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE54296
SRA SRX201303
BioSample SAMN01780242
Named Annotation GSM1024793_hg19_wgEncodeUwDnaseRpmi7951RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024793_hg19_wgEncodeUwDnaseRpmi7951HotspotsRep2.broadPeak.gz 2.6 Mb (ftp)(http) BROADPEAK
GSM1024793_hg19_wgEncodeUwDnaseRpmi7951PkRep2.narrowPeak.gz 1.8 Mb (ftp)(http) NARROWPEAK
GSM1024793_hg19_wgEncodeUwDnaseRpmi7951RawRep2.bigWig 158.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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