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Sample GSM1024791 Query DataSets for GSM1024791
Status Public on Oct 24, 2012
Title UW_DnaseSeq_Monocytes-CD14+_RO01746Rep2
Sample type SRA
Source name Monocytes-CD14+_RO01746
Organism Homo sapiens
Characteristics donor_id: ENCDO265AAA
biomaterial_type: primary cell
cell_type: CD14-positive monocyte
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Monocytes-CD14+_RO01746
cell organism: human
cell description: Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS18065
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider S. Heimfeld Laboratory, FHCRC
Treatment protocol None
Growth protocol MonoCD14_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX201301
BioSample SAMN01780240
Named Annotation GSM1024791_hg19_wgEncodeUwDnaseMonocd14ro1746RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024791_hg19_wgEncodeUwDnaseMonocd14ro1746HotspotsRep2.broadPeak.gz 2.4 Mb (ftp)(http) BROADPEAK
GSM1024791_hg19_wgEncodeUwDnaseMonocd14ro1746PkRep2.narrowPeak.gz 1.6 Mb (ftp)(http) NARROWPEAK
GSM1024791_hg19_wgEncodeUwDnaseMonocd14ro1746RawRep2.bigWig 252.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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