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Sample GSM1024791 Query DataSets for GSM1024791
Status Public on Oct 24, 2012
Title UW_DnaseSeq_Monocytes-CD14+_RO01746Rep2
Sample type SRA
 
Source name Monocytes-CD14+_RO01746
Organism Homo sapiens
Characteristics donor_id: ENCDO265AAA
biomaterial_type: primary cell
cell_type: CD14-positive monocyte
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Monocytes-CD14+_RO01746
cell organism: human
cell description: Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS18065
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider S. Heimfeld Laboratory, FHCRC
Treatment protocol None
Growth protocol MonoCD14_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX201301
BioSample SAMN01780240
Named Annotation GSM1024791_hg19_wgEncodeUwDnaseMonocd14ro1746RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024791_hg19_wgEncodeUwDnaseMonocd14ro1746HotspotsRep2.broadPeak.gz 2.4 Mb (ftp)(http) BROADPEAK
GSM1024791_hg19_wgEncodeUwDnaseMonocd14ro1746PkRep2.narrowPeak.gz 1.6 Mb (ftp)(http) NARROWPEAK
GSM1024791_hg19_wgEncodeUwDnaseMonocd14ro1746RawRep2.bigWig 252.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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