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Sample GSM1024790 Query DataSets for GSM1024790
Status Public on Oct 24, 2012
Title UW_DnaseSeq_Th17Rep1
Sample type SRA
 
Source name Th17
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Th17
cell organism: human
cell description: T helper cells expressing IL-17, primary pheresis of single normal subject
cell karyotype: normal
cell lineage: mesoderm
cell sex: B
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS11039
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. John Stamatoyannopoulos at UW
Treatment protocol None
Growth protocol AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Oct 24, 2012
Last update date Nov 12, 2015
Contact name ENCODE DCC
E-mail encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by GSE54296
SRA SRX201300
BioSample SAMN01780239
Named Annotation GSM1024790_hg19_wgEncodeUwDnaseTh17RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024790_hg19_wgEncodeUwDnaseTh17HotspotsRep1.broadPeak.gz 2.9 Mb (ftp)(http) BROADPEAK
GSM1024790_hg19_wgEncodeUwDnaseTh17PkRep1.narrowPeak.gz 877.3 Kb (ftp)(http) NARROWPEAK
GSM1024790_hg19_wgEncodeUwDnaseTh17RawRep1.bigWig 136.8 Mb (ftp)(http) BIGWIG
Raw data provided as supplementary file
Processed data provided as supplementary file

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