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Sample GSM1024789 Query DataSets for GSM1024789
Status Public on Oct 24, 2012
Title UW_DnaseSeq_CD4+_Naive_Wb11970640Rep1
Sample type SRA
Source name CD4+_Naive_Wb11970640
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: CD4+_Naive_Wb11970640
cell organism: human
cell description: CD4+ naive sorted cells, donor is Caucasian, male 26 year old, primary pheresis of single normal subject
cell karyotype: normal
cell lineage: mesoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS14108
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. John Stamatoyannopoulos at UW
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (3)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Reanalyzed by GSE54296
SRA SRX201299
BioSample SAMN01780238
Named Annotation GSM1024789_hg19_wgEncodeUwDnaseCd4naivewb11970640RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024789_hg19_wgEncodeUwDnaseCd4naivewb11970640HotspotsRep1.broadPeak.gz 2.8 Mb (ftp)(http) BROADPEAK
GSM1024789_hg19_wgEncodeUwDnaseCd4naivewb11970640PkRep1.narrowPeak.gz 965.6 Kb (ftp)(http) NARROWPEAK
GSM1024789_hg19_wgEncodeUwDnaseCd4naivewb11970640RawRep1.bigWig 151.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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