GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1024787 Query DataSets for GSM1024787
Status Public on Oct 24, 2012
Title UW_DnaseSeq_LHCN-M2Rep1
Sample type SRA
Source name LHCN-M2
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: LHCN-M2
cell organism: human
cell description: skeletal myoblasts derived from satellite cells from the pectoralis major muscle of a 41 year old caucasian heart transplant donor, immortalized with lox-hygro-hTERT ("LH"), and Cdk4-neo ("CN"), Zhu et al. (2007) in Aging Cell, vol. 6, pp 515-523, newly promoted to tier 2: not in 2011 analysis.
cell lineage: mesoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS20548
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. Woodring Wright
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Reanalyzed by GSE54296
SRA SRX201297
BioSample SAMN01780236
Named Annotation GSM1024787_hg19_wgEncodeUwDnaseLhcnm2RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024787_hg19_wgEncodeUwDnaseLhcnm2HotspotsRep1.broadPeak.gz 3.0 Mb (ftp)(http) BROADPEAK
GSM1024787_hg19_wgEncodeUwDnaseLhcnm2PkRep1.narrowPeak.gz 2.1 Mb (ftp)(http) NARROWPEAK
GSM1024787_hg19_wgEncodeUwDnaseLhcnm2RawRep1.bigWig 112.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap