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Sample GSM1024787 Query DataSets for GSM1024787
Status Public on Oct 24, 2012
Title UW_DnaseSeq_LHCN-M2Rep1
Sample type SRA
 
Source name LHCN-M2
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: LHCN-M2
cell organism: human
cell description: skeletal myoblasts derived from satellite cells from the pectoralis major muscle of a 41 year old caucasian heart transplant donor, immortalized with lox-hygro-hTERT ("LH"), and Cdk4-neo ("CN"), Zhu et al. (2007) in Aging Cell, vol. 6, pp 515-523, newly promoted to tier 2: not in 2011 analysis.
cell lineage: mesoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS20548
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. Woodring Wright
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by GSE54296
SRA SRX201297
BioSample SAMN01780236
Named Annotation GSM1024787_hg19_wgEncodeUwDnaseLhcnm2RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024787_hg19_wgEncodeUwDnaseLhcnm2HotspotsRep1.broadPeak.gz 3.0 Mb (ftp)(http) BROADPEAK
GSM1024787_hg19_wgEncodeUwDnaseLhcnm2PkRep1.narrowPeak.gz 2.1 Mb (ftp)(http) NARROWPEAK
GSM1024787_hg19_wgEncodeUwDnaseLhcnm2RawRep1.bigWig 112.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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