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Sample GSM1024785 Query DataSets for GSM1024785
Status Public on Oct 24, 2012
Title UW_DnaseSeq_bone_marrow_HS27aRep1
Sample type SRA
Source name bone_marrow_HS27a
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: bone_marrow_HS27a
cell organism: human
cell description: HS27a Human Marrow Stromal Cells are fibroblastoid cells immortalized with HPV16 E6/E7 genes as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005, insert DNA is LXSN-16 E6E7 packaged in PA31.
cell karyotype: normal
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS16602
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center
Treatment protocol None
Growth protocol HS27a_SOP-1.V.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE54296
SRA SRX201295
BioSample SAMN01780234
Named Annotation GSM1024785_hg19_wgEncodeUwDnaseHs27aRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024785_hg19_wgEncodeUwDnaseHs27aHotspotsRep1.broadPeak.gz 4.5 Mb (ftp)(http) BROADPEAK
GSM1024785_hg19_wgEncodeUwDnaseHs27aPkRep1.narrowPeak.gz 1.9 Mb (ftp)(http) NARROWPEAK
GSM1024785_hg19_wgEncodeUwDnaseHs27aRawRep1.bigWig 182.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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