GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1024784 Query DataSets for GSM1024784
Status Public on Oct 24, 2012
Title UW_DnaseSeq_MCF-7_Estradiol_100nM_1hrRep1
Sample type SRA
Source name MCF-7
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: MCF-7
cell organism: human
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: Estradiol_100nM_1hr
treatment description: 1 h with 100 nM Estradiol, hormone treatment (Stam)
labexpid: DS18271
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider ATCC
Treatment protocol Estradiol_100nM_1hr
Growth protocol Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
SRA SRX201294
BioSample SAMN01780233
Named Annotation GSM1024784_hg19_wgEncodeUwDnaseMcf7Est100nm1hRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024784_hg19_wgEncodeUwDnaseMcf7Est100nm1hHotspotsRep1.broadPeak.gz 3.7 Mb (ftp)(http) BROADPEAK
GSM1024784_hg19_wgEncodeUwDnaseMcf7Est100nm1hPkRep1.narrowPeak.gz 2.5 Mb (ftp)(http) NARROWPEAK
GSM1024784_hg19_wgEncodeUwDnaseMcf7Est100nm1hRawRep1.bigWig 154.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap