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Sample GSM1024784 Query DataSets for GSM1024784
Status Public on Oct 24, 2012
Title UW_DnaseSeq_MCF-7_Estradiol_100nM_1hrRep1
Sample type SRA
 
Source name MCF-7
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: MCF-7
cell organism: human
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: Estradiol_100nM_1hr
treatment description: 1 h with 100 nM Estradiol, hormone treatment (Stam)
labexpid: DS18271
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider ATCC
Treatment protocol Estradiol_100nM_1hr
Growth protocol Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Relations
SRA SRX201294
BioSample SAMN01780233
Named Annotation GSM1024784_hg19_wgEncodeUwDnaseMcf7Est100nm1hRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024784_hg19_wgEncodeUwDnaseMcf7Est100nm1hHotspotsRep1.broadPeak.gz 3.7 Mb (ftp)(http) BROADPEAK
GSM1024784_hg19_wgEncodeUwDnaseMcf7Est100nm1hPkRep1.narrowPeak.gz 2.5 Mb (ftp)(http) NARROWPEAK
GSM1024784_hg19_wgEncodeUwDnaseMcf7Est100nm1hRawRep1.bigWig 154.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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