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Sample GSM1024782 Query DataSets for GSM1024782
Status Public on Oct 24, 2012
Title UW_DnaseSeq_CD4+_Naive_Wb78495824Rep1
Sample type SRA
Source name CD4+_Naive_Wb78495824
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: CD4+_Naive_Wb78495824
cell organism: human
cell description: CD4+ naive sorted cells, donor is Causasian, female 35 year old, primary pheresis of single normal subject
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS15241
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. John Stamatoyannopoulos at UW
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE54296
SRA SRX201292
BioSample SAMN01780231
Named Annotation GSM1024782_hg19_wgEncodeUwDnaseCd4naivewb78495824RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024782_hg19_wgEncodeUwDnaseCd4naivewb78495824HotspotsRep1.broadPeak.gz 4.2 Mb (ftp)(http) BROADPEAK
GSM1024782_hg19_wgEncodeUwDnaseCd4naivewb78495824PkRep1.narrowPeak.gz 1.0 Mb (ftp)(http) NARROWPEAK
GSM1024782_hg19_wgEncodeUwDnaseCd4naivewb78495824RawRep1.bigWig 154.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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