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Sample GSM1024776 Query DataSets for GSM1024776
Status Public on Oct 24, 2012
Title UW_DnaseSeq_GM04504Rep2
Sample type SRA
Source name GM04504
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: GM04504
cell organism: human
cell description: adult twin pair fibroblasts, monozygotic twin of GM04503, 13% of the cells examined show random chromosome loss
cell karyotype: normal
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS18975
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider Coriell
Treatment protocol None
Growth protocol GM04504A_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE54296
SRA SRX201286
BioSample SAMN01780225
Named Annotation GSM1024776_hg19_wgEncodeUwDnaseGm04504RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024776_hg19_wgEncodeUwDnaseGm04504HotspotsRep2.broadPeak.gz 2.8 Mb (ftp)(http) BROADPEAK
GSM1024776_hg19_wgEncodeUwDnaseGm04504PkRep2.narrowPeak.gz 2.1 Mb (ftp)(http) NARROWPEAK
GSM1024776_hg19_wgEncodeUwDnaseGm04504RawRep2.bigWig 107.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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