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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 24, 2012 |
| Title |
UW_DnaseSeq_M059JRep1 |
| Sample type |
SRA |
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| Source name |
M059J
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| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: M059J
cell organism: human
cell description: malignant glioblastoma, glioma, lack DNA-dependent protein kinase activity, deficient in repair of DNA double strand breaks, the cells are negative for glial fibrillary acidic protein (GFAP), tumor specimen taken from a 33 year old
cell karyotype: cancer
cell lineage: ectoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS20493
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
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| Biomaterial provider |
ATCC
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| Treatment protocol |
None
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| Growth protocol |
M059J_Stam_protocol.pdf
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
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| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
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| Submission date |
Oct 24, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
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| Street address |
300 Pasteur Dr
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (2) |
| GSE29692 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
| GSE51336 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution |
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| Relations |
| Reanalyzed by |
GSE54296 |
| SRA |
SRX201283 |
| BioSample |
SAMN01780222 |
| Named Annotation |
GSM1024773_hg19_wgEncodeUwDnaseM059jRawRep1.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1024773_hg19_wgEncodeUwDnaseM059jHotspotsRep1.broadPeak.gz |
3.3 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1024773_hg19_wgEncodeUwDnaseM059jPkRep1.narrowPeak.gz |
2.5 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM1024773_hg19_wgEncodeUwDnaseM059jRawRep1.bigWig |
168.1 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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