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Sample GSM1024772 Query DataSets for GSM1024772
Status Public on Oct 24, 2012
Title UW_DnaseSeq_LHCN-M2_DIFF_4dRep2
Sample type SRA
Source name LHCN-M2
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: LHCN-M2
cell organism: human
cell description: skeletal myoblasts derived from satellite cells from the pectoralis major muscle of a 41 year old caucasian heart transplant donor, immortalized with lox-hygro-hTERT ("LH"), and Cdk4-neo ("CN"), Zhu et al. (2007) in Aging Cell, vol. 6, pp 515-523, newly promoted to tier 2: not in 2011 analysis.
cell lineage: mesoderm
cell sex: M
treatment: DIFF_4d
treatment description: Myocytes differentiated from myoblasts for 4 days. See specific cell protocol for treatment details. (Stam)
labexpid: DS20534
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider Dr. Woodring Wright
Treatment protocol DIFF_4d
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
SRA SRX201282
BioSample SAMN01780221
Named Annotation GSM1024772_hg19_wgEncodeUwDnaseLhcnm2Diff4dRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024772_hg19_wgEncodeUwDnaseLhcnm2Diff4dHotspotsRep2.broadPeak.gz 3.4 Mb (ftp)(http) BROADPEAK
GSM1024772_hg19_wgEncodeUwDnaseLhcnm2Diff4dPkRep2.narrowPeak.gz 2.4 Mb (ftp)(http) NARROWPEAK
GSM1024772_hg19_wgEncodeUwDnaseLhcnm2Diff4dRawRep2.bigWig 143.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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