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Sample GSM1024769 Query DataSets for GSM1024769
Status Public on Oct 24, 2012
Title UW_DnaseSeq_HBVSMCRep2
Sample type SRA
 
Source name HBVSMC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: HBVSMC
cell organism: human
cell description: brain vascular smooth muscle cells.
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS14845
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider ScienCell
Treatment protocol None
Growth protocol HBVSMC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Relations
Reanalyzed by GSE54296
SRA SRX201279
BioSample SAMN01780218
Named Annotation GSM1024769_hg19_wgEncodeUwDnaseHbvsmcRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024769_hg19_wgEncodeUwDnaseHbvsmcHotspotsRep2.broadPeak.gz 4.1 Mb (ftp)(http) BROADPEAK
GSM1024769_hg19_wgEncodeUwDnaseHbvsmcPkRep2.narrowPeak.gz 1.8 Mb (ftp)(http) NARROWPEAK
GSM1024769_hg19_wgEncodeUwDnaseHbvsmcRawRep2.bigWig 157.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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