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Sample GSM1024769 Query DataSets for GSM1024769
Status Public on Oct 24, 2012
Title UW_DnaseSeq_HBVSMCRep2
Sample type SRA
Source name HBVSMC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: HBVSMC
cell organism: human
cell description: brain vascular smooth muscle cells.
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS14845
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider ScienCell
Treatment protocol None
Growth protocol HBVSMC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE54296
SRA SRX201279
BioSample SAMN01780218
Named Annotation GSM1024769_hg19_wgEncodeUwDnaseHbvsmcRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024769_hg19_wgEncodeUwDnaseHbvsmcHotspotsRep2.broadPeak.gz 4.1 Mb (ftp)(http) BROADPEAK
GSM1024769_hg19_wgEncodeUwDnaseHbvsmcPkRep2.narrowPeak.gz 1.8 Mb (ftp)(http) NARROWPEAK
GSM1024769_hg19_wgEncodeUwDnaseHbvsmcRawRep2.bigWig 157.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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