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Sample GSM1024767 Query DataSets for GSM1024767
Status Public on Oct 24, 2012
Title UW_DnaseSeq_MCF-7_Estradiol_ctrl_0hrRep2
Sample type SRA
Source name MCF-7
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: MCF-7
cell organism: human
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: Estradiol_ctrl_0hr
treatment description: No hormone control, zero timepoint, used to distinguish untreated sample in series (Stam)
labexpid: DS18021
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider ATCC
Treatment protocol Estradiol_ctrl_0hr
Growth protocol Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
SRA SRX201277
BioSample SAMN01780216
Named Annotation GSM1024767_hg19_wgEncodeUwDnaseMcf7Estctrl0hRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024767_hg19_wgEncodeUwDnaseMcf7Estctrl0hHotspotsRep2.broadPeak.gz 4.4 Mb (ftp)(http) BROADPEAK
GSM1024767_hg19_wgEncodeUwDnaseMcf7Estctrl0hPkRep2.narrowPeak.gz 2.8 Mb (ftp)(http) NARROWPEAK
GSM1024767_hg19_wgEncodeUwDnaseMcf7Estctrl0hRawRep2.bigWig 243.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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