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Sample GSM1024766 Query DataSets for GSM1024766
Status Public on Oct 24, 2012
Title UW_DnaseSeq_CD20+_RO01778Rep2
Sample type SRA
Source name CD20+_RO01778
Organism Homo sapiens
Characteristics donor_id: ENCDO114AAA
biomaterial_type: primary cell
cell_type: B cell
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: CD20+_RO01778
cell organism: human
cell description: B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS17541
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider Rajinder Kaul, UW
Treatment protocol None
Growth protocol CD20+_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX201276
BioSample SAMN01780215
Named Annotation GSM1024766_hg19_wgEncodeUwDnaseCd20ro01778RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024766_hg19_wgEncodeUwDnaseCd20ro01778HotspotsRep2.broadPeak.gz 2.7 Mb (ftp)(http) BROADPEAK
GSM1024766_hg19_wgEncodeUwDnaseCd20ro01778PkRep2.narrowPeak.gz 1.3 Mb (ftp)(http) NARROWPEAK
GSM1024766_hg19_wgEncodeUwDnaseCd20ro01778RawRep2.bigWig 171.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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