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Sample GSM1024763 Query DataSets for GSM1024763
Status Public on Oct 24, 2012
Title UW_DnaseSeq_HPAECRep1
Sample type SRA
 
Source name HPAEC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: HPAEC
cell organism: human
cell description: pulmonary artery endothelial cells.
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS12916
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Lonza
Treatment protocol None
Growth protocol HPAEC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Oct 24, 2012
Last update date Aug 26, 2014
Contact name ENCODE DCC
E-mail encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX201273
BioSample SAMN01780212
Named Annotation GSM1024763_hg19_wgEncodeUwDnaseHpaecRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024763_hg19_wgEncodeUwDnaseHpaecHotspotsRep1.broadPeak.gz 5.4 Mb (ftp)(http) BROADPEAK
GSM1024763_hg19_wgEncodeUwDnaseHpaecPkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1024763_hg19_wgEncodeUwDnaseHpaecRawRep1.bigWig 197.1 Mb (ftp)(http) BIGWIG
Raw data provided as supplementary file
Processed data provided as supplementary file

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