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Sample GSM1024763 Query DataSets for GSM1024763
Status Public on Oct 24, 2012
Title UW_DnaseSeq_HPAECRep1
Sample type SRA
Source name HPAEC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: HPAEC
cell organism: human
cell description: pulmonary artery endothelial cells.
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS12916
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Lonza
Treatment protocol None
Growth protocol HPAEC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX201273
BioSample SAMN01780212
Named Annotation GSM1024763_hg19_wgEncodeUwDnaseHpaecRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024763_hg19_wgEncodeUwDnaseHpaecHotspotsRep1.broadPeak.gz 5.4 Mb (ftp)(http) BROADPEAK
GSM1024763_hg19_wgEncodeUwDnaseHpaecPkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1024763_hg19_wgEncodeUwDnaseHpaecRawRep1.bigWig 197.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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