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Sample GSM1024759 Query DataSets for GSM1024759
Status Public on Oct 24, 2012
Title UW_DnaseSeq_H7-hESC_diffProtA_14dRep1
Sample type SRA
Source name H7-hESC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
treatment: diffProtA_14d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 14 days, cell sorting and specific growth factors were used, lineage: mesoderm
labexpid: DS12147
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider WiCell Research Institute
Treatment protocol diffProtA_14d
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE54296
SRA SRX201269
BioSample SAMN01780208
Named Annotation GSM1024759_hg19_wgEncodeUwDnaseH7esDiffa14dRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024759_hg19_wgEncodeUwDnaseH7esDiffa14dHotspotsRep1.broadPeak.gz 4.5 Mb (ftp)(http) BROADPEAK
GSM1024759_hg19_wgEncodeUwDnaseH7esDiffa14dPkRep1.narrowPeak.gz 1.6 Mb (ftp)(http) NARROWPEAK
GSM1024759_hg19_wgEncodeUwDnaseH7esDiffa14dRawRep1.bigWig 164.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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