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Sample GSM1024757 Query DataSets for GSM1024757
Status Public on Oct 24, 2012
Title UW_DnaseSeq_bone_marrow_MSCRep1
Sample type SRA
 
Source name bone_marrow_MSC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: bone_marrow_MSC
cell organism: human
cell description: These cells are primary fibroblastoid cells obtained from human bone marrow of normal donors as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005.
cell karyotype: normal
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS20514
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center
Treatment protocol None
Growth protocol MSC_marrow-fibroblastoid_SOP_v2.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Relations
Reanalyzed by GSE54296
SRA SRX201267
BioSample SAMN01780206
Named Annotation GSM1024757_hg19_wgEncodeUwDnaseMscRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024757_hg19_wgEncodeUwDnaseMscHotspotsRep1.broadPeak.gz 3.2 Mb (ftp)(http) BROADPEAK
GSM1024757_hg19_wgEncodeUwDnaseMscPkRep1.narrowPeak.gz 2.5 Mb (ftp)(http) NARROWPEAK
GSM1024757_hg19_wgEncodeUwDnaseMscRawRep1.bigWig 115.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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