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Sample GSM1024757 Query DataSets for GSM1024757
Status Public on Oct 24, 2012
Title UW_DnaseSeq_bone_marrow_MSCRep1
Sample type SRA
Source name bone_marrow_MSC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: bone_marrow_MSC
cell organism: human
cell description: These cells are primary fibroblastoid cells obtained from human bone marrow of normal donors as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005.
cell karyotype: normal
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS20514
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center
Treatment protocol None
Growth protocol MSC_marrow-fibroblastoid_SOP_v2.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE54296
SRA SRX201267
BioSample SAMN01780206
Named Annotation GSM1024757_hg19_wgEncodeUwDnaseMscRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024757_hg19_wgEncodeUwDnaseMscHotspotsRep1.broadPeak.gz 3.2 Mb (ftp)(http) BROADPEAK
GSM1024757_hg19_wgEncodeUwDnaseMscPkRep1.narrowPeak.gz 2.5 Mb (ftp)(http) NARROWPEAK
GSM1024757_hg19_wgEncodeUwDnaseMscRawRep1.bigWig 115.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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