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Sample GSM1024755 Query DataSets for GSM1024755
Status Public on Oct 24, 2012
Title UW_DnaseSeq_H7-hESC_diffProtA_5dRep2
Sample type SRA
Source name H7-hESC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
treatment: diffProtA_5d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 5 days, lineage: mesoderm
labexpid: DS11953
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider WiCell Research Institute
Treatment protocol diffProtA_5d
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE54296
SRA SRX201265
BioSample SAMN01780204
Named Annotation GSM1024755_hg19_wgEncodeUwDnaseH7esDiffa5dRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024755_hg19_wgEncodeUwDnaseH7esDiffa5dHotspotsRep2.broadPeak.gz 4.7 Mb (ftp)(http) BROADPEAK
GSM1024755_hg19_wgEncodeUwDnaseH7esDiffa5dPkRep2.narrowPeak.gz 2.0 Mb (ftp)(http) NARROWPEAK
GSM1024755_hg19_wgEncodeUwDnaseH7esDiffa5dRawRep2.bigWig 172.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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