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Sample GSM1024749 Query DataSets for GSM1024749
Status Public on Oct 24, 2012
Title UW_DnaseSeq_Th1_Wb33676984Rep1
Sample type SRA
 
Source name Th1_Wb33676984
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Th1_Wb33676984
cell organism: human
cell description: Th1 cells in vivo isolation
cell karyotype: normal donor is Asian, female 26 year old, primary pheresis of single normal subject
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS18015
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. John Stamatoyannopoulos at UW
Treatment protocol None
Growth protocol AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Relations
Reanalyzed by GSE59016
Reanalyzed by GSE53962
Reanalyzed by GSE54296
SRA SRX201259
BioSample SAMN01780198
Named Annotation GSM1024749_hg19_wgEncodeUwDnaseTh1wb33676984RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024749_hg19_wgEncodeUwDnaseTh1wb33676984HotspotsRep1.broadPeak.gz 5.0 Mb (ftp)(http) BROADPEAK
GSM1024749_hg19_wgEncodeUwDnaseTh1wb33676984PkRep1.narrowPeak.gz 1.3 Mb (ftp)(http) NARROWPEAK
GSM1024749_hg19_wgEncodeUwDnaseTh1wb33676984RawRep1.bigWig 229.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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