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Sample GSM1024744 Query DataSets for GSM1024744
Status Public on Oct 24, 2012
Title UW_DnaseSeq_Treg_Wb78495824Rep1
Sample type SRA
Source name Treg_Wb78495824
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Treg_Wb78495824
cell organism: human
cell description: T regulatory cells in vivo isolation
cell karyotype: normal donor is Causasian, female 35 year old, primary pheresis of single normal subject
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS14702
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. John Stamatoyannopoulos at UW
Treatment protocol None
Growth protocol AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Reanalyzed by GSE59016
Reanalyzed by GSE53962
Reanalyzed by GSE54296
SRA SRX201254
BioSample SAMN01780193
Named Annotation GSM1024744_hg19_wgEncodeUwDnaseTregwb78495824RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024744_hg19_wgEncodeUwDnaseTregwb78495824HotspotsRep1.broadPeak.gz 2.4 Mb (ftp)(http) BROADPEAK
GSM1024744_hg19_wgEncodeUwDnaseTregwb78495824PkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1024744_hg19_wgEncodeUwDnaseTregwb78495824RawRep1.bigWig 178.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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