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Sample GSM1024743 Query DataSets for GSM1024743
Status Public on Oct 24, 2012
Title UW_DnaseSeq_PrECRep2
Sample type SRA
Source name PrEC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: PrEC
cell organism: human
cell description: prostate epithelial cell line
cell karyotype: normal
cell lineage: epithelial
cell sex: U
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS12088
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 2
Biomaterial provider Lonza
Treatment protocol None
Growth protocol PrEC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX201253
BioSample SAMN01780192
Named Annotation GSM1024743_hg19_wgEncodeUwDnasePrecRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1024743_hg19_wgEncodeUwDnasePrecHotspotsRep2.broadPeak.gz 4.8 Mb (ftp)(http) BROADPEAK
GSM1024743_hg19_wgEncodeUwDnasePrecPkRep2.narrowPeak.gz 1.8 Mb (ftp)(http) NARROWPEAK
GSM1024743_hg19_wgEncodeUwDnasePrecRawRep2.bigWig 204.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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