GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1024739 Query DataSets for GSM1024739
Status Public on Oct 24, 2012
Title UW_DnaseSeq_Th2_Wb54553204Rep1
Sample type SRA
Source name Th2_Wb54553204
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Th2_Wb54553204
cell organism: human
cell description: Th2 cells in vivo isolation, donor is Caucasian, male 33 year old, primary pheresis of single normal subject
cell karyotype: normal
cell lineage: mesoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS17597
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. John Stamatoyannopoulos at UW
Treatment protocol None
Growth protocol AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Reanalyzed by GSE59016
Reanalyzed by GSE53962
Reanalyzed by GSE54296
SRA SRX201249
BioSample SAMN01780188
Named Annotation GSM1024739_hg19_wgEncodeUwDnaseTh2wb54553204RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1024739_hg19_wgEncodeUwDnaseTh2wb54553204HotspotsRep1.broadPeak.gz 1.8 Mb (ftp)(http) BROADPEAK
GSM1024739_hg19_wgEncodeUwDnaseTh2wb54553204PkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1024739_hg19_wgEncodeUwDnaseTh2wb54553204RawRep1.bigWig 144.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap