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Sample GSM1022671 Query DataSets for GSM1022671
Status Public on Oct 19, 2012
Title UW_ChipSeq_HFF-Myc_CTCFRep1
Sample type SRA
Source name HFF-Myc
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HFF-Myc
cell organism: human
cell description: foreskin fibroblast cells expressing canine cMyc
cell karyotype: normal
cell lineage: fibroblast
cell sex: M
antibody: CTCF
antibody antibodydescription: Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH001896
labexpid: DS18322
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center
Treatment protocol None
Growth protocol HFFMyc_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 18, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
SRA SRX199899
BioSample SAMN01774203
Named Annotation GSM1022671_hg19_wgEncodeUwTfbsHffmycCtcfStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1022671_hg19_wgEncodeUwTfbsHffmycCtcfStdHotspotsRep1.broadPeak.gz 2.7 Mb (ftp)(http) BROADPEAK
GSM1022671_hg19_wgEncodeUwTfbsHffmycCtcfStdPkRep1.narrowPeak.gz 665.1 Kb (ftp)(http) NARROWPEAK
GSM1022671_hg19_wgEncodeUwTfbsHffmycCtcfStdRawRep1.bigWig 118.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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