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Sample GSM1022653 Query DataSets for GSM1022653
Status Public on Oct 19, 2012
Title UW_ChipSeq_BE2_C_CTCFRep1
Sample type SRA
Source name BE2_C
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: BE2_C
cell organism: human
cell description: neuroblastoma, BE-C is a clone of the SK-N-BE neuroblastoma cell line (see ATCC CRL-2271) that was established in November of 1972 from a bone marrow biopsy taken from a 2-year-old individual with disseminated neuroblastoma after repeated courses of chemotherapy and radiotherapy.
cell karyotype: cancer
cell lineage: ectoderm
cell sex: M
antibody: CTCF
antibody antibodydescription: Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH001892
labexpid: DS18307
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol BE2-C_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 18, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
SRA SRX199881
BioSample SAMN01774185
Named Annotation GSM1022653_hg19_wgEncodeUwTfbsBe2cCtcfStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1022653_hg19_wgEncodeUwTfbsBe2cCtcfStdHotspotsRep1.broadPeak.gz 3.1 Mb (ftp)(http) BROADPEAK
GSM1022653_hg19_wgEncodeUwTfbsBe2cCtcfStdPkRep1.narrowPeak.gz 923.4 Kb (ftp)(http) NARROWPEAK
GSM1022653_hg19_wgEncodeUwTfbsBe2cCtcfStdRawRep1.bigWig 139.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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