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Sample GSM1022652 Query DataSets for GSM1022652
Status Public on Oct 19, 2012
Title UW_ChipSeq_HCT-116_CTCFRep1
Sample type SRA
Source name HCT-116
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HCT-116
cell organism: human
cell description: colorectal carcinoma (PMID: 7214343)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
antibody: CTCF
antibody antibodydescription: Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000950
labexpid: DS18710
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HCT116_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 18, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
SRA SRX199880
BioSample SAMN01774184
Named Annotation GSM1022652_hg19_wgEncodeUwTfbsHct116CtcfStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1022652_hg19_wgEncodeUwTfbsHct116CtcfStdHotspotsRep1.broadPeak.gz 2.3 Mb (ftp)(http) BROADPEAK
GSM1022652_hg19_wgEncodeUwTfbsHct116CtcfStdPkRep1.narrowPeak.gz 754.8 Kb (ftp)(http) NARROWPEAK
GSM1022652_hg19_wgEncodeUwTfbsHct116CtcfStdRawRep1.bigWig 122.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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