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Sample GSM1022643 Query DataSets for GSM1022643
Status Public on Oct 19, 2012
Title UW_ChipSeq_NB4_CTCFRep1
Sample type SRA
Source name NB4
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: NB4
cell organism: human
cell description: acute promyelocytic leukemia cell line. (PMID: 1995093)
cell karyotype: cancer
cell lineage: mesoderm
cell sex: U
antibody: CTCF
antibody antibodydescription: Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000970
labexpid: DS16345
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 or Yale (Stanford): National Cell Culture Center
Treatment protocol None
Growth protocol NB4_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 18, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
SRA SRX199871
BioSample SAMN01774175
Named Annotation GSM1022643_hg19_wgEncodeUwTfbsNb4CtcfStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1022643_hg19_wgEncodeUwTfbsNb4CtcfStdHotspotsRep1.broadPeak.gz 3.2 Mb (ftp)(http) BROADPEAK
GSM1022643_hg19_wgEncodeUwTfbsNb4CtcfStdPkRep1.narrowPeak.gz 718.4 Kb (ftp)(http) NARROWPEAK
GSM1022643_hg19_wgEncodeUwTfbsNb4CtcfStdRawRep1.bigWig 146.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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