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Sample GSM1022640 Query DataSets for GSM1022640
Status Public on Oct 19, 2012
Title UW_ChipSeq_A549_CTCFRep1
Sample type SRA
 
Source name A549
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: A549
cell organism: human
cell description: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male." - ATCC, newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
antibody: CTCF
antibody antibodydescription: Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH001904
labexpid: DS18303
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol A549_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs
 
Submission date Oct 18, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX199868
BioSample SAMN01774172
Named Annotation GSM1022640_hg19_wgEncodeUwTfbsA549CtcfStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1022640_hg19_wgEncodeUwTfbsA549CtcfStdHotspotsRep1.broadPeak.gz 1.4 Mb (ftp)(http) BROADPEAK
GSM1022640_hg19_wgEncodeUwTfbsA549CtcfStdPkRep1.narrowPeak.gz 581.1 Kb (ftp)(http) NARROWPEAK
GSM1022640_hg19_wgEncodeUwTfbsA549CtcfStdRawRep1.bigWig 25.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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