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Sample GSM102207 Query DataSets for GSM102207
Status Public on Mar 30, 2006
Title LS-60
Sample type RNA
 
Source name lung
Organism Homo sapiens
Characteristics Cancer
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from lung squamous cell carcinoma samples according to Standard Trizol protocol.
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description lung squamous carcinoma
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Mar 29, 2006
Last update date Mar 29, 2006
Contact name Jack Yu
E-mail(s) jyu9@VRXUS.jnj.com
Phone 858-320-3362
Fax 858-784-3182
Organization name Veridex, LLC
Street address 3210 Merryfield Row
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE4573 Gene expression signatures for predicting prognosis of squamous cell lung carcinomas

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity after global scaling the average intensity to 600.

Data table
ID_REF VALUE
AFFX-BioB-5_at 477.6
AFFX-BioB-M_at 723.5
AFFX-BioB-3_at 316.2
AFFX-BioC-5_at 1614.4
AFFX-BioC-3_at 1452.2
AFFX-BioDn-5_at 2583.3
AFFX-BioDn-3_at 7688.1
AFFX-CreX-5_at 15474.6
AFFX-CreX-3_at 19428.9
AFFX-DapX-5_at 41.4
AFFX-DapX-M_at 49.9
AFFX-DapX-3_at 22.4
AFFX-LysX-5_at 4.6
AFFX-LysX-M_at 71.2
AFFX-LysX-3_at 73.6
AFFX-PheX-5_at 9.4
AFFX-PheX-M_at 6
AFFX-PheX-3_at 50.6
AFFX-ThrX-5_at 18.5
AFFX-ThrX-M_at 51.8

Total number of rows: 22283

Table truncated, full table size 362 Kbytes.




Supplementary data files not provided
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