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Sample GSM1014540 Query DataSets for GSM1014540
Status Public on Oct 03, 2012
Title UW_DnaseDgf_Th1_Wb33676984
Sample type SRA
Source name Th1_Wb33676984
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: Th1_Wb33676984
cell organism: human
cell description: Th1 cells in vivo isolation
cell karyotype: normal donor is Asian, female 26 year old, primary pheresis of single normal subject
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS18015
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider John Stamatoyannopoulos
Treatment protocol None
Growth protocol AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX193612
BioSample SAMN01761120
Named Annotation GSM1014540_hg19_wgEncodeUwDgfTh1wb33676984Raw.bigWig
Named Annotation GSM1014540_hg19_wgEncodeUwDgfTh1wb33676984Sig.bigWig

Supplementary file Size Download File type/resource
GSM1014540_hg19_wgEncodeUwDgfTh1wb33676984Hotspots.broadPeak.gz 3.2 Mb (ftp)(http) BROADPEAK
GSM1014540_hg19_wgEncodeUwDgfTh1wb33676984Pk.narrowPeak.gz 1.9 Mb (ftp)(http) NARROWPEAK
GSM1014540_hg19_wgEncodeUwDgfTh1wb33676984Raw.bigWig 367.2 Mb (ftp)(http) BIGWIG
GSM1014540_hg19_wgEncodeUwDgfTh1wb33676984Sig.bigWig 638.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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