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Sample GSM1014539 Query DataSets for GSM1014539
Status Public on Oct 03, 2012
Title UW_DnaseDgf_LHCN-M2_DIFF_4d
Sample type SRA
Source name LHCN-M2
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: LHCN-M2
cell organism: human
cell description: skeletal myoblasts derived from satellite cells from the pectoralis major muscle of a 41 year old caucasian heart transplant donor, immortalized with lox-hygro-hTERT ("LH"), and Cdk4-neo ("CN"), Zhu et al. (2007) in Aging Cell, vol. 6, pp 515-523, newly promoted to tier 2: not in 2011 analysis.
cell lineage: mesoderm
cell sex: M
treatment: DIFF_4d
treatment description: Myocytes differentiated from myoblasts for 4 days. See specific cell protocol for treatment details. (Stam)
labexpid: DS20534
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider Woodring Wright, M.D., Ph.D.
Treatment protocol DIFF_4d
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX193611
BioSample SAMN01761119
Named Annotation GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dRaw.bigWig
Named Annotation GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dSig.bigWig

Supplementary file Size Download File type/resource
GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dHotspots.broadPeak.gz 4.4 Mb (ftp)(http) BROADPEAK
GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dPk.narrowPeak.gz 3.4 Mb (ftp)(http) NARROWPEAK
GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dRaw.bigWig 321.5 Mb (ftp)(http) BIGWIG
GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dSig.bigWig 514.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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