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| Status |
Public on Oct 03, 2012 |
| Title |
UW_DnaseDgf_LHCN-M2_DIFF_4d |
| Sample type |
SRA |
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| Source name |
LHCN-M2
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| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: LHCN-M2
cell organism: human
cell description: skeletal myoblasts derived from satellite cells from the pectoralis major muscle of a 41 year old caucasian heart transplant donor, immortalized with lox-hygro-hTERT ("LH"), and Cdk4-neo ("CN"), Zhu et al. (2007) in Aging Cell, vol. 6, pp 515-523, newly promoted to tier 2: not in 2011 analysis.
cell lineage: mesoderm
cell sex: M
treatment: DIFF_4d
treatment description: Myocytes differentiated from myoblasts for 4 days. See specific cell protocol for treatment details. (Stam)
labexpid: DS20534
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
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| Biomaterial provider |
Woodring Wright, M.D., Ph.D.
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| Treatment protocol |
DIFF_4d
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
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| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
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| Submission date |
Oct 03, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
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| Street address |
300 Pasteur Dr
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
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| Platform ID |
GPL11154 |
| Series (1) |
| GSE26328 |
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human] |
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| Relations |
| SRA |
SRX193611 |
| BioSample |
SAMN01761119 |
| Named Annotation |
GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dRaw.bigWig |
| Named Annotation |
GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dSig.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dHotspots.broadPeak.gz |
4.4 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dPk.narrowPeak.gz |
3.4 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dRaw.bigWig |
321.5 Mb |
(ftp)(http) |
BIGWIG |
| GSM1014539_hg19_wgEncodeUwDgfLhcnm2Diff4dSig.bigWig |
514.9 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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